Showing posts with label genetic genealogy. Show all posts
Showing posts with label genetic genealogy. Show all posts

Wednesday, April 15, 2015

Getting More From Your Autosomal DNA: Genetic Family Trees

   For years, genealogists have been able to use Y-DNA to validate paternal pedigrees and sort surnames into family groups.  This has been a great advantage for the world of genealogy, but it has been restricted to men and paternal lines.  Autosomal DNA is more inclusive.  Both women and men can take this test and it illuminates the entire family tree as opposed to just the male line.  For those of us that have taken an autosomal test, there are a number of tools that help find cousin matches.  When we find multiple cousins matching the same chunk of DNA, we reach out to our new cousins and attempt to find a common ancestor in our trees.  Many times this is unsuccessful due to incomplete trees.  This is what is called a bottom-up approach.

   What if we used a top-down approach?  What if we started with your 10th great-grandmother?  You’d say autosomal DNA can’t go back that far.  That’s 12 generations ago and the DNA would be diluted to less than 1% of the original amount.  If autosomal DNA behaved mathematically, you’d be correct.  Autosomal DNA behaves more like Legos.  When we inherit DNA from our parents, it’s true that we get 50% from mom and 50% from dad.  That’s where the fairness ends.  When we look at what we inherit from our grandparents (through our parents), it is never 50/50.


   Instead, what we get from our grandparents is a random split.  In the case of the illustration above, this grandchild received a 54/46 split.  This is not uncommon.  See this Slate article.

   Our chromosomes behave like building blocks.  There is a tendency for genes located closely on a chromosome to be inherited together in a block.  This is called gene linkage.  There is no set size for these blocks; size is completely based on the genes that tend to stay together.  Segments around the 2 cM (centiMorgan) size have been found consistently (American Journal of Human Genetics).  The DNA we get from our grandparents come to us in large contiguous sections of hundreds of these blocks.  From generation to generation, the large sections are inherited randomly and unfairly, but the building blocks have a tendency to stay intact and not recombine.  With each generation, there is 50% chance of inheriting or not inheriting a specific block. 

   It’s possible that these 2 cM building blocks are about 25 generations old.  So, when we start with our 10th great-grandparents, they have lots of these blocks that they inherited from their parents and gave to their children.  What we can expect is that their descendants will have an assortment of these blocks from them and other ancestors.  When we examine the autosomal DNA for two dozen of their descendants, we find a set of genetic blocks in common.  No one descendant will have all the available genetic blocks an ancestor has left in the gene pool.  We may find five descendants sharing a block on chromosome one and seven descendants sharing a block on chromosome 12.  With DNA samples from two dozen descendants, about 15 ancestral genetic blocks can be identified.  All of the ancestral genetic blocks taken together uniquely identify your 10th great-grandparents as a couple.  Only their descendants would have this genetic block combination.  (Except in the situation where one set of siblings marries another set of sibling from a different family.)

   When we take the process a step further and analyze the next generation, we start to build a genetic family tree.


The table above shows the genetic blocks identified for Stephen Hopkins and each of his children that had descendants.  For simplicity, only one individual is listed for each column.  Remember that each column of genetic blocks actually represents a married couple: Constance Hopkins and Nicholas Snow, Deborah Hopkins and Andrew Ring, etc.  Each genetic block has a chromosome number and start and end locations.  Blocks in green represent inherited blocks from Stephen to his children.  As we build a genetic family tree, it now becomes possible to take a DNA sample from a living individual and match with Stephen Hopkins.  Once a match with Stephen is found, matches to his children can be checked to see which child the sample descends from.  Generations can be added to the genetic tree until known descendant DNA data has been exhausted.  In the Hopkins family, I was able to extend Constance’s line by a generation to Mary Snow and then then to Mary’s daughter, Mary Paine, before the data ran out.


   Similar to Y-DNA, these sets of genetic blocks (autosomal haplotype) can be used to identify genealogical relationships and sometimes the lack of relationships.  John Hopkins of Connecticut has often been connected as a son of Stephen Hopkins.  When we generate the autosomal haplotype for John and compare it to Stephen, we can see that there is no relation across the board.

   The red blocks indicate John’s DNA segments that have no corresponding segments with Stephen.  The yellow blocks indicate a similar chromosome location, but no genetic match.  Y-DNA gives us the ability to use DNA to see how brothers are potentially connected.  Now autosomal DNA gives us the ability to see how brothers and sisters are potentially connected.


   The autosomal haplotyping process is not a silver bullet that will solve all of our genealogy problems.  It will add to our toolkit as we validate family trees, work through brick-walls and attempt to solve genealogy mysteries.

Reference:

Maglio, MR (2015) Autosomal Haplotypes and the Genetic Reconstruction of Family Trees (Link)

© 2015 Michael Maglio and OriginsDNA. All Rights Reserved.

Tuesday, November 20, 2012

Stephen Hopkins: Saxon DNA?

   As we approach Thanksgiving, it’s a great time to write about our Mayflower ancestors.  So far, I have found two on my wife's side, Stephen Hopkins and Stephen Hopkins.  Ok, that’s really just one, but I have two lines that trace back to him.   This isn’t unusual, estimates put the count of Stephen Hopkins’ descendants at about 2 million Americans.

   What can Stephen Hopkins’ DNA tell us about his origins and his ancestors?  First, I should say that no one has a sample of Stephen’s DNA.  What we know about Stephen comes from tests completed by his male-line descendants with corroborating genealogical paper trails.  The Hopkins families are members of y-DNA haplogroup R1b, the largest genetic population in Europe.  R1b is often associated with the Celtic and Gallic tribes.  Hopkins’ DNA may be able to shed additional light on his birthplace, extend his genealogy further by tapping into an older family line or tell us about his deep ancestral origins.

   One of the first things I like to do is compare the haplotype, (the numeric markers from a y-DNA test) against a public database like ySearch.org.  The goal is to find other parallel lines of Hopkins with ancestry that predates Stephen.  This would allow us to work forward in time, connecting to Stephen and his father John, breaking through the current brick wall.  Unfortunately, no such records exist.

   What we do get from ySearch is list of genetic cousins and their ancestral locations.  Plotting these locations generates a distribution from Kent to Cornwall across southern England.  The highest concentration of cousins is in the historic Anglo-Saxon kingdom of Wessex.  The current research on Stephen Hopkins has him baptized in Hampshire, the heart of Wessex.

   What kind of R1b was Hopkins?  Was he a Celt, a Gaul, an Anglo-Saxon or something completely different?  One way to get close to the answer is to look at his genetic cousins again.  Since R1b is such a large group, it is important to focus on both the haplotype and SNP that defines his R1b subgroup.  The SNP that best defines Stephen is S493, which on the 2012 haplogroup tree is R1b1a2a1a1a2.  With the explosion of new SNPs identification and the rapidly expanding and changing subgroup nomenclature, researchers are advocating the use of the SNP rather than subgroup as a naming convention.  Let’s call Stephen Hopkins R-S493.

   When I take all these genetic cousins and run them through TribeMapper®, a pattern forms.  Ancestors start to pile up on either side of the English Channel and an approximate date of migration emerges.  Here’s where we pull out our history books.  If the date were about 2,500 years ago, I would say this was a Celtic migration.  If the date were 2,000 years ago, I might say these were Gaels fleeing the Romans.   The calculations come out to be about 1,500 years ago, putting this migration in line with the Anglo-Saxon invasion of Britain.

   Why stop there?  What flavor of Anglo-Saxon are we talking about?  Angle, Saxon, Jute?  The great thing about tribe mapping is that we can continuously turn back the clock and get a new picture.  If we find a Danish connection, then we might say Jutes or an association to the Angeln region of Germany, we could say Angles.  We have to be careful as those names and locations were just a snapshot in time when ancient historians catalogued Germanic tribes.  Those tribes, like all tribes, were just passing through.

   Stephen Hopkins’ DNA points to a genetic cluster in modern day Lithuania and Latvia.   This data most closely correlates to the Saxons and their origins on the Baltic coast.  Continuing this process gives us the following migration map.


   The R-S493 data takes us through Finland, Sweden and back to the mainland Europe to the Iberian Peninsula.  This puts the origin of R-S493 in Iberia about 4,000 years ago ± 500 years.

   We can’t be certain that Stephen Hopkins has Saxon DNA.  We can’t even say that all Saxons were haplogroup R1b.  It’s unlikely that they were a single homogenous ethnic group, but the core of the tribe would have had strong familial and genetic ties.  Were Hopkins’ ancestors at the core of this tribe or part of the fringe, picked up along the way?  A broader study of DNA associated with the same places and times would be required to answer that question.

   If we look at the surname Hopkins, its origins are from Hobbes-kin and even further back to the Germanic name Hrodberht.  Stephen Hopkins and his closest genetic cousins are found in the historic Kingdom of Wessex (West Saxons).  Time-wise, there is a correlation to the Anglo-Saxon invasion of Britain.  We can even make a connection to the proto-Saxons along the Baltic coast.  I’m going out on a limb and calling Hopkins a Saxon.

   That Saxon bloodline remained adventurous and served Stephen well as he voyaged to Bermuda, Jamestown and Plymouth colony.

   It’s never obvious where DNA will lead.  Each tribe mapping is an adventure in itself.


© Michael R. Maglio and OriginsDNA

Thursday, November 15, 2012

What’s in My gDNA Toolbox

If I were talking about my regular genealogy toolbox, I would be listing links to all the great websites with digital records (e.g. FamilySearch). I would also talk about great repositories like NARA, BPL or the Mass Archives. Or, I would mention tips and techniques like Nearest Neighbor and the Hidden Treasures in old photos.



Now that we are adding DNA as a tool for genealogy, we have to pack a new toolbox.

The Databases – record sources to compare your DNA against

· Ysearch.org – Y-DNA database
· Mitosearch.org – mtDNA database
· FTDNA.com – DNA Project database
· WorldFamilies.net – DNA Project database
· SMGF.org – DNA Project database

The Testing Companies – many different testing companies that are not all equal – do your homework

· FTDNA.com – DNA testing (my favorite)
· 23andMe.com – DNA testing
· SMGF.org – DNA testing
· Ancestry.com – DNA testing
· GeneTree.com - DNA testing

Sources of gDNA Knowledge – There are many areas of genetic genealogy that are open for interpretation. Read everything and come to your own conclusions.

· ISoGG.org – Advocates for the use of genetics as a tool for genealogical research
· Wikipedia - Haplogroup details
· nationalgeographic.com/genographic

Analysis Tools – DNA results love to be compared and analyzed

· hprg.com/hapest5/index.html – Whit Athey’s Haplogroup predictor
· mymcgee.com/tools/ - Dean McGee’s Y-DNA comparison tools
· www.math.mun.ca/~dapike/FF23utils/ - David Pike’s autosomal comparison tools
· http://gedmatch.com/ - Autosomal comparison tools
· PHYLIP – phylogenetic tree creation

DNA Data Management – you need to organize and manage your DNA records

· Legacy Family Tree – supports DNA records (the one I use)
· Family Tree Maker, RootsMagic, Ancestral Quest and The Master Genealogist – supports DNA
· Excel – spreadsheet tools

Misc
· Google Maps – User defined maps – you never know when you might want to build your own custom map

This is hardly an exhaustive list. I use most of these tools on a weekly basis. I’m always looking for new tools (or creating ones that don’t exist).

What's in your toolbox? Let me know what tools you are using.

#gDNA

Thursday, April 26, 2012

Migration Mapping: Eldred the Terrible


   Genetic genealogy has been very good at identifying distant origins and for making connections along paternal and maternal lines going back a half dozen centuries.  What seems to be missing is how we got from point A to point B.


'Eldridge' clan mapping

   At some distant place in time in every genealogy the surname becomes irrelevant.  The only way to go further back is to use DNA testing.  We have to rely on Clans and Tribes, genetically related groups of individuals, to get an understanding of our history.

   Pride in your historic nationality is wonderful and can tell you much about your family, but we are all descendants of nomads.  As nomads we belong to ancient cultures just as much as we belong to any one nationality.  To know what culture you are you need to know where your tribe was and when.

   When I had my DNA tested I learned that I was part of haplogroup G with origins in the Caucasus Mountains going back about 22,000 years.  I also learned that I had no close matches in the last few centuries.  That left me with very little to work with. So, I put on my analyst hat and developed a technique for plotting the migration path of my tribe at different periods in history.  I needed to answer how my people got from the Caucasus to a little village outside of Naples, Italy.

   I knew I had hit on something after my first mapping exercise.

'Maglio' clan mapping

   The individuals that I plotted lined up along the Rhine River and down the Apennines (with a few stragglers in Wales).  Successive maps, each going back further in time, showed a pattern along the Danube and around the Black Sea back to the Caucasus Mountains.  I now have my migration answers and a plausible correlation to the Etruscan metalworking culture.

   I have been using my technique to help my clients get a deeper understanding of their history and their culture.  For all of you with the surname Eldridge, Eldredge, Aldrich and variation, I have posted a sample report on my website - "The Genetic Genealogy of Eldridge"  

   I'd love to hear about other successes mapping genetic data across time.