Showing posts with label genealogy. Show all posts
Showing posts with label genealogy. Show all posts

Wednesday, April 15, 2015

Getting More From Your Autosomal DNA: Genetic Family Trees

   For years, genealogists have been able to use Y-DNA to validate paternal pedigrees and sort surnames into family groups.  This has been a great advantage for the world of genealogy, but it has been restricted to men and paternal lines.  Autosomal DNA is more inclusive.  Both women and men can take this test and it illuminates the entire family tree as opposed to just the male line.  For those of us that have taken an autosomal test, there are a number of tools that help find cousin matches.  When we find multiple cousins matching the same chunk of DNA, we reach out to our new cousins and attempt to find a common ancestor in our trees.  Many times this is unsuccessful due to incomplete trees.  This is what is called a bottom-up approach.

   What if we used a top-down approach?  What if we started with your 10th great-grandmother?  You’d say autosomal DNA can’t go back that far.  That’s 12 generations ago and the DNA would be diluted to less than 1% of the original amount.  If autosomal DNA behaved mathematically, you’d be correct.  Autosomal DNA behaves more like Legos.  When we inherit DNA from our parents, it’s true that we get 50% from mom and 50% from dad.  That’s where the fairness ends.  When we look at what we inherit from our grandparents (through our parents), it is never 50/50.


   Instead, what we get from our grandparents is a random split.  In the case of the illustration above, this grandchild received a 54/46 split.  This is not uncommon.  See this Slate article.

   Our chromosomes behave like building blocks.  There is a tendency for genes located closely on a chromosome to be inherited together in a block.  This is called gene linkage.  There is no set size for these blocks; size is completely based on the genes that tend to stay together.  Segments around the 2 cM (centiMorgan) size have been found consistently (American Journal of Human Genetics).  The DNA we get from our grandparents come to us in large contiguous sections of hundreds of these blocks.  From generation to generation, the large sections are inherited randomly and unfairly, but the building blocks have a tendency to stay intact and not recombine.  With each generation, there is 50% chance of inheriting or not inheriting a specific block. 

   It’s possible that these 2 cM building blocks are about 25 generations old.  So, when we start with our 10th great-grandparents, they have lots of these blocks that they inherited from their parents and gave to their children.  What we can expect is that their descendants will have an assortment of these blocks from them and other ancestors.  When we examine the autosomal DNA for two dozen of their descendants, we find a set of genetic blocks in common.  No one descendant will have all the available genetic blocks an ancestor has left in the gene pool.  We may find five descendants sharing a block on chromosome one and seven descendants sharing a block on chromosome 12.  With DNA samples from two dozen descendants, about 15 ancestral genetic blocks can be identified.  All of the ancestral genetic blocks taken together uniquely identify your 10th great-grandparents as a couple.  Only their descendants would have this genetic block combination.  (Except in the situation where one set of siblings marries another set of sibling from a different family.)

   When we take the process a step further and analyze the next generation, we start to build a genetic family tree.


The table above shows the genetic blocks identified for Stephen Hopkins and each of his children that had descendants.  For simplicity, only one individual is listed for each column.  Remember that each column of genetic blocks actually represents a married couple: Constance Hopkins and Nicholas Snow, Deborah Hopkins and Andrew Ring, etc.  Each genetic block has a chromosome number and start and end locations.  Blocks in green represent inherited blocks from Stephen to his children.  As we build a genetic family tree, it now becomes possible to take a DNA sample from a living individual and match with Stephen Hopkins.  Once a match with Stephen is found, matches to his children can be checked to see which child the sample descends from.  Generations can be added to the genetic tree until known descendant DNA data has been exhausted.  In the Hopkins family, I was able to extend Constance’s line by a generation to Mary Snow and then then to Mary’s daughter, Mary Paine, before the data ran out.


   Similar to Y-DNA, these sets of genetic blocks (autosomal haplotype) can be used to identify genealogical relationships and sometimes the lack of relationships.  John Hopkins of Connecticut has often been connected as a son of Stephen Hopkins.  When we generate the autosomal haplotype for John and compare it to Stephen, we can see that there is no relation across the board.

   The red blocks indicate John’s DNA segments that have no corresponding segments with Stephen.  The yellow blocks indicate a similar chromosome location, but no genetic match.  Y-DNA gives us the ability to use DNA to see how brothers are potentially connected.  Now autosomal DNA gives us the ability to see how brothers and sisters are potentially connected.


   The autosomal haplotyping process is not a silver bullet that will solve all of our genealogy problems.  It will add to our toolkit as we validate family trees, work through brick-walls and attempt to solve genealogy mysteries.

Reference:

Maglio, MR (2015) Autosomal Haplotypes and the Genetic Reconstruction of Family Trees (Link)

© 2015 Michael Maglio and OriginsDNA. All Rights Reserved.

Thursday, November 15, 2012

What’s in My gDNA Toolbox

If I were talking about my regular genealogy toolbox, I would be listing links to all the great websites with digital records (e.g. FamilySearch). I would also talk about great repositories like NARA, BPL or the Mass Archives. Or, I would mention tips and techniques like Nearest Neighbor and the Hidden Treasures in old photos.



Now that we are adding DNA as a tool for genealogy, we have to pack a new toolbox.

The Databases – record sources to compare your DNA against

· Ysearch.org – Y-DNA database
· Mitosearch.org – mtDNA database
· FTDNA.com – DNA Project database
· WorldFamilies.net – DNA Project database
· SMGF.org – DNA Project database

The Testing Companies – many different testing companies that are not all equal – do your homework

· FTDNA.com – DNA testing (my favorite)
· 23andMe.com – DNA testing
· SMGF.org – DNA testing
· Ancestry.com – DNA testing
· GeneTree.com - DNA testing

Sources of gDNA Knowledge – There are many areas of genetic genealogy that are open for interpretation. Read everything and come to your own conclusions.

· ISoGG.org – Advocates for the use of genetics as a tool for genealogical research
· Wikipedia - Haplogroup details
· nationalgeographic.com/genographic

Analysis Tools – DNA results love to be compared and analyzed

· hprg.com/hapest5/index.html – Whit Athey’s Haplogroup predictor
· mymcgee.com/tools/ - Dean McGee’s Y-DNA comparison tools
· www.math.mun.ca/~dapike/FF23utils/ - David Pike’s autosomal comparison tools
· http://gedmatch.com/ - Autosomal comparison tools
· PHYLIP – phylogenetic tree creation

DNA Data Management – you need to organize and manage your DNA records

· Legacy Family Tree – supports DNA records (the one I use)
· Family Tree Maker, RootsMagic, Ancestral Quest and The Master Genealogist – supports DNA
· Excel – spreadsheet tools

Misc
· Google Maps – User defined maps – you never know when you might want to build your own custom map

This is hardly an exhaustive list. I use most of these tools on a weekly basis. I’m always looking for new tools (or creating ones that don’t exist).

What's in your toolbox? Let me know what tools you are using.

#gDNA

Your Mother's Mother

Deep Into DNA*

Your mother’s ancestry can be extremely challenging. Most of us live in a patrilineal society. The wife and the children take the surname of the husband. History shows us that recording the maiden name of the wife was often an afterthought. We have all tried traditional genealogy for our mother’s line. Some of us can go back a couple of generations and have hit brick walls. Some of us have researched a dozen generations. Mitochondrial DNA testing can aid a genealogist in discovering those lost surnames and validating your research.

Two months ago, I wrote about y-DNA and its use in tracing your paternal line. Mitochondrial DNA testing looks at your maternal line. There are many similarities and just as many differences between the two tests.

...continued at The In-Depth Genealogist with a free membership.

*The Deep Into DNA article series is published each month in The In-Depth Genealogist Newsletter and will demystify genetic genealogy and make sense out of DNA testing terminology. Each month we will talk about the types of tests available from major labs and show relevant examples on how to use DNA in your genealogy research.

#gDNA

Your Father's Father

Deep Into DNA*
 

Raise your hand if you’d like to know more about your surname and your father’s ancestry. I’m raising mine!

Most of us live in a patrilineal society. The wife and the children take the surname of the husband. We can’t help but to associate with our father’s family, his clan. The males in the family will inherit the Y chromosome virtually unchanged, though genetically, we can only attribute a small fraction of our overall DNA to that patrilineal line. Psychologically though, 50% of our ethnic identity comes from dad.




We have all tried traditional genealogy for our father’s line. Some of us go back a couple of generations and some of us have researched a dozen generations. A few of us are adopted and know nothing about our paternity. Y-DNA testing has benefits that aid a genealogist in all these situations...

...continued at The In-Depth Genealogist with a free membership.

*The Deep Into DNA article series is published each month in The In-Depth Genealogist Newsletter and will demystify genetic genealogy and make sense out of DNA testing terminology. Each month we will talk about the types of tests available from major labs and show relevant examples on how to use DNA in your genealogy research.

#gDNA

Friday, April 27, 2012

Why Y-DNA?

   I talk about using DNA for genealogy often.  My favorite is the Y-DNA test.  It has the largest number of benefits for the researcher.  I also get quite a few discouraging comments about Y-DNA.


   Recently I was told that Y-DNA marker mutation rates were too unstable.  The comment might give the impression that Y-DNA testing was unreliable or unusable.  This is far from the truth.  The marker mutation rates are exactly what makes Y-DNA so valuable.  Without the mutations, we would all be one big happy/unhappy haplogroup.

   Another comment I hear is that Y-DNA only tests your paternal line and that is just a small fraction of your genealogy.  This is true.  But...

   My genealogy is more than just my paternal line.  I’m sure many of us can’t help but to associate deeply with our paternal line, our surname.  That deep association makes getting the Y-DNA test so important.
That doesn’t mean that I’ve stopped with my DNA.  I’ve also collected my father-in-law’s DNA.  I am planning to collect DNA from my mother’s male line and my mother-in-law’s male line, etc., etc.  It’s very possible to collect samples for hundreds of your surnames.  See the second half of my post on NPEs.

Here is a short list of reasons to get your Y-DNA tested:

   Cultural origins:  We focus a lot of our time on nationalities.  I’m Italian or I’m Irish.  Your nationality will only take you so many years into the past, depending on how old your nation is.  DNA testing (y-dna and mitochondrial) allows you to go further back in time to a cultural heritage – celtic, norse, phoenician or native American as examples.  Between my Y-DNA and my autosomal tests, I can tell you which Caucasus Mountain culture that I relate to.

   Traditional research validation:  You can have a great paper trail and have a bad genealogy.  There will be non-paternal events.  When you compare your Y-DNA test for your surname Brown and all the other matches, across a half dozen databases, come back with the surname Brown you will feel confident about your research.  If your matches come back with the surname Green, then you will have some work to do.

   Traditional research to find Y-DNA:  You will need to use traditional research to find all those cousins you need to get samples from.  You can also use your existing research to find the Y-DNA of your ancestors.  Typically every DNA database asks for the most distant paternal ancestor (Y-DNA) or maternal ancestor (mito).  If you search for your ancestors among these records you will then have the results of a test someone else has already completed.  I will be posting a mini-webinar on this subject to walk you through the process.

   Adoption research:  In the case of adoption, you are hoping to get that surprise surname.  In my research, I ran across a person by the name of Tom Doty.  In his profile, he stated that he had been adopted.  What made him stand out was that his DNA matched so closely with a very large Dodge surname study.  I contacted him and pointed him in the right direction.

   Discover living relatives:  Every match is a connection to a living cousin.  Odds are pretty good that one of you can help the other connect the dots on your common ancestry.

   Mapping your tribe:  As I mentioned earlier, it is the mutations in Y-DNA that give it the most value.  Using those mutations, you can trace your ancestors across time.  Using readily available tools, you can calculate that you and a group of individuals have a common ancestor 1000 years ago or 2000 years.  Map the ancestral locations of that group and look for patterns to emerge.  I gave a talk on this subject in March.

   All DNA tests have their pros and cons.  With a good understanding of the possibilities and the limitations, we can develop some new tricks that the DNA companies have never thought of.  If there is one thing that I have learned, it is that genealogists are very resourceful.